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BLASTNew! We provide NCBI- BLAST (Basic Local Alignment Search Tool) to compare nucleotide or protein sequences to our EST sequence databases. BLAST can be used to infer functional and evolutionary relationships between sequences and help identify members of gene families.

The A. mexicanum transcriptome has been deep sequenced (15,000,000 Roche 454 short sequence reads and 50K Sanger reads) and assembled. The resulting assembly can now be BLAST searched here. There are two variants of the assembly - Assembly V4.0 w/ Isotigs  and Assembly V4.0 w/ Contigs. Please click here to see a detailed explanation about Isotigs from 454.

Click here to view statistics for various assembly versions (PDF)

Contact This e-mail address is being protected from spambots. You need JavaScript enabled to view it for V4 assembly download

 

Choose program to use and database to search:

Program Database

Enter here your input data as   

Or load it from disk

Please read about FASTAformat description

Set subsequence: From:   To:


The query sequence is filtered for low complexity regions by default.
Filter Low complexity Mask for lookup table only

Expect    Matrix Perform ungapped alignment

Query Genetic Codes (blastx only)

Database Genetic Codes (tblast[nx] only)

Frame shift penalty for blastx

Limit search to results of Entrez query

Other advanced options:        Show Tax Blast reports


   NCBI-gi      Graphical Overview    Alignment view
Descriptions    Alignments Color schema