Codon Usage Table for Ambystoma Mexicanum generated from 300K codons is now available
| #Coding | GC | 48.09% | ||
| #1st | letter | GC | 53.14% | |
| #2nd | letter | GC | 39.13% | |
| #3rd | letter | GC | 52.00% | |
| #Codon | Amino Acid | Fraction | Frequency | Number |
| GCA | A | 0.325 | 20.627 | 80275 |
| GCC | A | 0.288 | 18.258 | 71056 |
| GCG | A | 0.098 | 6.231 | 24250 |
| GCT | A | 0.289 | 18.301 | 71222 |
| TGC | C | 0.551 | 11.936 | 46454 |
| TGT | C | 0.449 | 9.739 | 37903 |
| GAC | D | 0.472 | 25.281 | 98387 |
| GAT | D | 0.528 | 28.246 | 109927 |
| GAA | E | 0.502 | 35.676 | 138842 |
| GAG | E | 0.498 | 35.38 | 137693 |
| TTC | F | 0.487 | 19.205 | 74740 |
| TTT | F | 0.513 | 20.201 | 78619 |
| GGA | G | 0.322 | 18.679 | 72694 |
| GGC | G | 0.269 | 15.617 | 60780 |
| GGG | G | 0.203 | 11.764 | 45784 |
| GGT | G | 0.207 | 11.993 | 46673 |
| CAC | H | 0.512 | 13.307 | 51789 |
| CAT | H | 0.488 | 12.705 | 49447 |
| ATA | I | 0.199 | 10.182 | 39625 |
| ATC | I | 0.398 | 20.381 | 79320 |
| ATT | I | 0.403 | 20.648 | 80356 |
| AAA | K | 0.476 | 31.107 | 121063 |
| AAG | K | 0.524 | 34.256 | 133317 |
| CTA | L | 0.095 | 9.171 | 35692 |
| CTC | L | 0.155 | 14.952 | 58191 |
| CTG | L | 0.304 | 29.307 | 114058 |
| CTT | L | 0.176 | 17.026 | 66263 |
| TTA | L | 0.089 | 8.593 | 33444 |
| TTG | L | 0.181 | 17.486 | 68051 |
| ATG | M | 1 | 24.447 | 95142 |
| AAC | N | 0.524 | 22.028 | 85728 |
| AAT | N | 0.476 | 20.02 | 77913 |
| CCA | P | 0.364 | 18.625 | 72483 |
| CCC | P | 0.222 | 11.36 | 44211 |
| CCG | P | 0.123 | 6.285 | 24458 |
| CCT | P | 0.292 | 14.937 | 58133 |
| CAA | Q | 0.36 | 16.486 | 64162 |
| CAG | Q | 0.64 | 29.298 | 114021 |
| AGA | R | 0.236 | 12.304 | 47886 |
| AGG | R | 0.21 | 10.917 | 42487 |
| CGA | R | 0.145 | 7.522 | 29275 |
| CGC | R | 0.142 | 7.386 | 28743 |
| CGG | R | 0.154 | 8.005 | 31154 |
| CGT | R | 0.113 | 5.899 | 22956 |
| AGC | S | 0.211 | 16.631 | 64725 |
| AGT | S | 0.168 | 13.188 | 51326 |
| TCA | S | 0.155 | 12.178 | 47395 |
| TCC | S | 0.187 | 14.718 | 57278 |
| TCG | S | 0.076 | 5.976 | 23256 |
| TCT | S | 0.203 | 15.957 | 62101 |
| ACA | T | 0.321 | 17.539 | 68259 |
| ACC | T | 0.283 | 15.506 | 60346 |
| ACG | T | 0.134 | 7.336 | 28552 |
| ACT | T | 0.262 | 14.339 | 55803 |
| GTA | V | 0.143 | 9.016 | 35090 |
| GTC | V | 0.215 | 13.574 | 52826 |
| GTG | V | 0.395 | 24.914 | 96960 |
| GTT | V | 0.247 | 15.542 | 60486 |
| TGG | W | 1 | 11.596 | 45128 |
| TAC | Y | 0.552 | 16.684 | 64931 |
| TAT | Y | 0.448 | 13.532 | 52665 |
| TAA | * | 0 | 0 | 0 |
| TAG | * | 0 | 0 | 0 |
| TGA | * | 0 | 0 | 0 |
| Total Codons: | 3891794 |
* The above table was generated using cusp from EMBOSS package.
